Location: Home > Scientists
  Associate Professor
Name:
HE, Shun-Min
Subject:
Bioinformatics
Tel/Fax:
+86-10-64807279  / 
E-mail:
hesm@ioz.ac.cn
Address:
Key Laboratory of Zoological Systematics and Evolution, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing 100101, P.R. China
More:
Group of Co-evolution and Molecular Systematics      
Resume:
  • 2009-present: Associate Professor, Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences.
  • 2004-2009: Ph.D. in Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences; Directed by Pro. Chen Runsheng.
  • 2001-2003: Software Engineer, Beijing NEC IC Design Co. Ltd.
  • 1997-2001: B.A. in Electronic Engineering, Nanjin University of Science and Technology.

Research Interests:
  • Non-coding RNAs' interaction: especially the relationship of miRNAs, piRNAs and ml-ncRNAs.
  • Genes' interaction network: especially networks comprising protein coding genes and non-coding RNAs.
  • Human-associated microbial communities: especially the functions of microbes in gastro-intestinal.
  • Evolution and phylogeny: especially co-evolution.
  • Bioinformatics software, algorithm and database: such as software and algorithm about miRNAs' prediction, miRNA target genes' prediction and database about non-coding RNAs.

Awards and Honors:
  • Chinese Academy of Science Dean's Outstanding Award, 2009
  • Second Prize for Excellent Papers in Institute of Biophysics, Chinese Academy of Science, 2008
  • Excellent Student in Center for Advanced Computing Research, Institute of Computing Technology, Chinese Academy of Science, 2007
  • Acquire Merit Student Scholarship in Chinese Academy of Sciences for many times, 2004-2009
  • Second Prize in University Level Physics Competition, 1999
  • Second Prize in University Level Mathematical Contest in Modeling, 1999
  • Third Prize in Mathematics Competition for Undergraduate of Jiang Su Province, 1998
  • First Prize in University Level Mathematics Competition, 1998
  • Acquire Merit Student Scholarship of University Level for many times,1997-2001
  • Second Prize in Zhejiang Region in National High School Physics Olympiad Competition, 1996
  • Gain “Excellent” in the level 4 test of National Computer Rank Examination, which is the highest level and recognized by the Educational Testing Service of the United States of America, 1999
  • Gain "Advance Software Engineer" certificate, 2000

Professional Activities:

Research Grants:

Selected Publications:

Research Gate:(https://www.researchgate.net/profile/Shunmin_He )

(*co-first author, # co-corresponding author)

  1. Peng Zhang*, Jun-Yan Kang*, Lan-Tao Gou*, Jiajia Wang, Yuanchao Xue, Geir Skogerboe, Peng Dai, Da-Wei Huang, Runsheng Chen, Xiang-Dong Fu #, Mo-Fang Liu #, Shunmin He#. (2015) MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes. Cell Research 25(2): 193-207.
  2. Bao-fa Sun*, Yong-Xing Li*, Ling-Yi Jia, Li-Hua Niu, Robert W. Murphy, Peng Zhang, Shunmin He #, Da-Wei Huang #. (2015) Regulation of transcription factors on sexual dimorphism of fig wasps. Scientific reports 5: 10696.
  3. Guoqiang Zhang*, Hua Huang*, Di Liu*, Ying Cheng, Xiaoling Liu, Wenxin Zhang, Ruichuan Yin, Dapeng Zhang, Peng Zhang, Jianzhao Liu, Chaoyi Li, Baodong Liu, Yuewan Luo, Yuanxiang Zhu, Ning Zhang, Shunmin He, Chuan He, Hailin Wang#, Dahua Chen#. 2015. N(6)-methyladenine DNA modification in Drosophila. Cell 161(4): 893-906.
  4. Jiao Yuan*, Peng Zhang*, Ya Cui, Jiajia Wang, Geir Skogerbo, Da-Wei Huang, Runsheng Chen#, Shunmin He#. (2016) Computational identification of piRNA targets on mouse mRNAs. Bioinformatics. 32(8):1170-1177.
  5. Yi Zhao*, Shunmin He*, Changning Liu*, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbo#, Runsheng Chen# (2008). MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control. Trends Genet. vol. 24 (7) pp. 323-7;
  6. Shunmin He*, Changning Liu*, Geir Skogerbo, Haitao Zhao, Jie Wang, Tao Liu, Baoyan Bai, Yi Zhao#, Runsheng Chen# (2008). NONCODE v2.0: decoding the non-coding. Nucleic Acids Res. vol. 36 (Database issue) pp. D170-2.